SUN, Sept 18%
%%HPP Investigators Meeting
08:00-15:30%%%Taipei Int’l Convention Center
Room 101B, 202A, South Lounge (3F)
MON, Sept 19%
%%Joint Cluster Group Mtg.
07:30-08 :30%
%%C-HPP Poster Session
9:30 - 10:30 & 16:20-17:30%
%%PIC Meeting
THURS, Sept 22%
%%HPP Post-Congress Day
08:30 - 18:00%%%Fleur de Chine Hotel,
Sun Moon Lake, Nantou
(Appendix 5)
HPP Plenary Session I
(Rm 101B: See Appendix 1)

Moderators: Young-Ki Paik & Fernando Corrales

8:00-08:55: Rm 101B
HPP Overview

Chair: Michael Snyder (SSAB Chair)
(C-HPP, B/D-HPP, Bioinformatics, Ab, MS)

09:00-09:30%%%HPP Plenary Lecture 1
Chair: Fernando Corrales
Genomics for HPP
Michael Snyder, Stanford Univ. CA

09:30-10:00%%%HPP Plenary Lecture 2
Chair: Christoph M. Overall
“Emerging Tech” -Small ORF Analysis
Alan Saghatelian, Salk Inst. CA

Coffee Breaks (Sign up the Cluster Meeting)

C- and B/D-HPP separate sessions

C-HPP Session 1

Rm 202A
(Appendix 1, 2)
1. Introduction (YK Paik)
2. Top 50 MP Marathon Challenge (CM Overall)
3. Reports on Missing Protein (Lydie Lane)
Chr 3 T. Nishimura
Chr 10 J. LaBaer
Chr 15 G. Domont
Chr 18 S. N. Naryzhny/A. Archakov
Chr 19 G. Marko-Varga
Chr 22 A. Pandey
Chr X T. Yamamoto
Chr Y G. Hosseini Salekdeh
4. Open Discussion
B/D-HPP Session 1**

10:20-12:30 Rm 101B
1. Extreme conditions proteomics (Eugene Nikolaev)
2. Glycoproteomics (Hisashi Narimatsu)
3. Brain Proteome Project (Peter Nilsson)
4. Cardiovascular Initiative (Maggie Lam & PeiPei Ping)
5. Plasma Initiative (Jochen Schwenk)
6. Food and Nutrition Initiative (Paola Roncada)
7. Diabetes Initiative (Loïc Dayon)
8. Mitochondria Initiative (Mauro Fassano)

HPP Plenary Session II (Appendix 1)
Joint Cluster Group Meeting for C-HPP and B/D-HPP (Rm101B)

12:30-13:10 Lunch

13:10-15:20 Joint Cluster Session

(1). Introduction (5-10 min)

-What is “Cluster Collaboration?” (Appendix 2) (Young-Ki Paik)
Move to each designated room for Break-out session

(2). Break-out Session (120 min)
A. Cancer Cluster Group (Rm 101B): Led by Siqi Liu, Ed Nice & Hui Zhang
International Cancer Collaboration: Australia and US (15 min)
Moonshot Project & Int’l Cancer Proteomics Collaboration
Mark Baker (HUPO President), Phil Robinson (ProCan) and Jerry Lee (NCI Office)
Introduction of B/D-HPP Cancer (20 min)
Hui Zhang and Colleagues
Discussion on the Strategic Points (Appendix 1) (85 min)

B. IVTT Cluster Group (Rm 202A) (120 min)
Led by Gyorgy Marko-Varga Joshua LaBaer
Discussion on the Strategic Points (Appendix 1)

C. Reproductive Disease (South Lounge) (120 min)
Led by Charles Pineau & Ghasem Hosseini Salekdeh
Discussion on the Strategic Points (Appendix 1)
Note: While both Membrane Proteins and Neurodegenerative Disease groups may join one of above groups, they may have their own Cluster meeting (203 and 102) on Monday early morning (07:30-8:30).

15:20 HPP Meeting Ends
Joint Cluster Mtg.
(C- and B/D-HPP)

Membrane Cluster Group (Rm 203)
Neurodegenerative Disease Group (Rm 102)
(subject to change w/o notice)

C-HPP Session 2
C-HPP Poster Session
(Chair: Lydie Lane, Co-Chair: Peter Horvatovich)
(Appendix 3)

09:30-10:30: Session 1
(Even Numbers of Chr. 2, 4, 6, 8, 10, 12, 14, 16,18, 20, 22.+X, Y)
15:30-16:30: Session 2
(Odd Numbers of Chr. 1, 3, 5, 7, 9, 11, 13, 15, 17, 19, 21, Mito)

Poster Awards (Cash Prize and -Award Certificate by HUPO President) will be given to Total 7 Best Outstanding Poster Presenters at the Closing Ceremony.

12:20-13:30%%%C-HPP Session 3

C-HPP PIC Meeting (with Lunch: Rm 202A)

(Appendix 4)
1. Report Session (L. Lane)
2. Approval of Pending. Agenda (YK Paik)
3. Nomination and Election (Chris Overall)
4. Future Plans (2016-19) (YK Paik)

List of Appendices
1. HPP Investigators Meeting Agenda
2. New C-HPP Strategies (Cluster Collaboration &Top 50 MP Marathon and)
3. C-HPP Poster Session Guides
4. C-HPP PIC Meeting Agenda
5. HPP Post-Congress Day Agenda
6. Bioinformatics HUB Program
7. Hotel Reservation Form (Fleur De Chine, Sun Moon Lake)
8. 16th C-HPP Workshop in Brazil
Moderator: Gil Omenn


Joint B/D and C-HPP EC meeting

HPP Update Session:
(1) Highlights from Congress and discussions of B/D, C-HPP, Resource Pillars

(2) Bioinformatics Hub, JPR special issue 2016 and future, experience with HPP MS Guidelines v2.1.

Open discussion about recent strategic successes and strategic planning for next year and for 5 years: aims, directions, changes, deliverables

Coffee Break

HPP Plenary Lecture 3, “Lung Cancer Genomics”, Dr. Sung-Liang Yu, NUT, Taiwan

Reports on the Cluster Meeting (C- & B/D-HPP+CPTAC)
1. Cancer
3. Reproductive Dis
4. Membrane Proteins
5. Neurodegenerative Disease,


HPP Concluding Session
1. SSAB Members’ Feedback, led by Cathy Costello
2. HPP Operations & Communication matters (C. Pineau, C. Borchers)
3. Resources and Funding
4. Publications, including assessment of 2016 JPR special issue.
5. Strategic objectives & planned meetings and workshops, Brazil, 2016, and beyond

Boat Tour with Informal Discussion

Dinner and Social Mixer

Appendix 6

Bioinformatics Hub at HUPO Congress 2016


The Bioinformatics Hub is a place where bioinformaticians gather together with three aims: (i) to provide their advice, knowledge, and support to anyone with a relevant question; (ii) to discuss current issues and challenges in proteomics informatics with the entire community; and (iii) to work on interesting, synergistic projects and to freely exchange tools, algorithms and know-how with each other, across all labs, seniorities and levels of experience. This will be achieved by specific sessions in the agenda. The Ask the Experts sessions (every day between 9h30 and 12h30) explicitly open the floor to anyone with a question, and leverages the combined experience and expertise of all Hub participants to answer those questions. The Special Interest Topic sessions address a current problem or issue in proteomics informatics in a short (max 20 min lecture), followed by an open, discussion of the topic by all participants, moderated by the organizers. The last type of session, the workshop style sessions, allow participants to work on synergistic topics of their choice, or to exchange know-how, tools and algorithms with the other participants. The Bioinformatics Hub will operate under an open door policy, and that anyone is free to walk in at any time and participate in the work or the discussions, ask a question of someone, or just listen in on what is going on! The bioinformatics hub is meant to be inclusive, low threshold, and aimed at knowledge exchange across all levels of experience.

Also note that representatives from the vendors are very much welcome to participate in the Hub, and typically are well-represented indeed. So your questions on vendor software can also be handled by the experts!

Sunday September 18:

  • 08h30-09h00: Arrival
  • 09h00-09h30: Introduction and concept by organizers
  • 09h30-10h00: Stand-up introductions
  • 10h00-12h00: Pitches: up to 15 minutes for anyone who wants to propose a topic to work on; a tool, library or approach that could be useful for someone; a problem they want address (during the meeting) and can use some help on; a currently neglected question that they think is important to the field; a tool that is currently missing and which they possibly would like to (help) develop
  • 12h00-13h00: Lunch break
  • 13h00-15h00: Pitches continued - Continued 15 minute pitches. These pitches are meant to create seed cores around which people can organize for the subsequent days' workshop sessions
  • 15h00-17h30: Split up into smaller groups and proceed workshop style

Monday September 19:

  • 08h30-10h00: Workshop style sessions
  • 09h30-12h30: Ask the Experts sessions
  • 12h30-13h30: Lunch break
  • 13h30-15h30: Special interest topic + discussion
  • 15h30-17h30: continue workshop style session

Tuesday September 20:

  • 08h30-10h00: Workshop style sessions
  • 09h30-12h30: Ask the Experts sessions
  • 12h30-13h30: Lunch break
  • 13h30-15h30: Special interest topic + discussion
  • 15h30-17h30: continue workshop style session

Wednesday September 21:

  • 08h30-10h00: Workshop style sessions
  • 09h30-12h30: Ask the Experts sessions
  • 10h30-12h30: Glycoproteomics Informatics (details below)
  • 12h30-13h30: Lunch break
  • 13h30-15h30: Special interest topic + discussion
  • 13h30-15h30: Glycoproteomics Informatics Ask the Experts session
  • 15h30-17h30: continue workshop style session


  • Glycoproteomics Informatics (Khoo Kayhooi)
  • HPP Data Interpretation Guidelines (Eric Deutsch)
  • Use of bioRXiv in Computational Proteomics (Eric Deutsch)

Special Planned Topics:

Glycoproteomics Informatics (Organizer: Khoo Kayhooi)

  • Wednesday 10h30-12h30: Glycoproteomics Informatics
    • Pospectus
    • Byonic
    • Pinnacle
    • (Team from China)
    • (Team from Korea)
    • Discussion
  • Wednesday 13h30-15h30: Glycoproteomics Informatics Ask the Experts session (Organizer: Khoo Kayhooi)

Click here to go the overview of C-HPP activities in HUPO 2016, Taipei.