DTL focuse meeting on "Data integration, standards and fair principles in proteomics", August 29, 2016, Utrecht, The Netherlands
DTL focus meeting on
Data integration, standards and fair principles in proteomics
August 29, 2016, 13:00-17:00
NH Hotels Utrecht Central, Jaarbeursplein, 24, 3521AR, Utrecht, The Netherlands
Program
13:15-13:45 Alain van Gool (Radboudumc) Welcome, introduction and setting the scene, followed by Proteomics in personalized medicine and big data approaches. Presentation in pdf format is available here.
13:45-14:10 Luiz Olavo Bonino (DTL/VU): discussion on FAIR data (concept and use, type of data, data standards, tools, repositories and knowledge center used in proteomics). Presentation in pdf format is available here.
14:10-14:35 Thang V Pham (VUMC): multi-omics data integration colon cancer using proteogenomics approach. Presentation in pdf format is available here.
Break
14:45-15:10 Péter Horvatovich (RUG): Current state of proteomics standardization, (C-)HPP data quality guidelines. Presentation in pdf format is available here.
15:10-15:20 Lars Verschuren (TNO): Phenotype Database. Presentation in pdf format is available here.
15:20-15:45 Chris Evelo (Maastricht University): Efficient data management system using open-source systems such as colimns or Study Capture Framework. What are the other system used by the others? Presentation in pdf format is available here.
15:45-16:10 Mariska Bierkens & Meike de Wit (Trait): It ain’t FAIR. Presentation in pdf format is available here.
Break
16.20 Discussion led by Péter Horvatovich (RUG) “Preparing for a BYOD on FAIRyfying Proteomics Data”
17.00 End of meeting
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Discussion
- Which data types are being produced or used?
- Which data formats are being used?
- Are proteomics data linked/integrated with other (omics and phenotype) data?
- Which tools and workflows are being used?
- Which repositories are being used?