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HPP SESSIONS

Tuesday, September 29, 2015


07:30 - 09:00 HPP 09: Proteomics Standards Initiative and ProteomeXchange Consortium
Chairs: Eric Deutsch, USA & Henning Hermjakob, UK
Location: ROOM 2+3

The HUPO Proteomics Standards Initiative (PSI) defines community standards for data representation in proteomics to facilitate data comparison, exchange and verification. We contribute to data management and integration in all other HUPO initiatives, and have published a modular set of standards for proteomics data representation. For details of the HUPO PSI please see www.psidev.info. Based on the HUPO PSI standards, we have developed ProteomeXchange, an international consortium to standardize collection and dissemination of public proteomics data
worldwide (www.proteomexchange.org). In this session, we will provide an overview of current PSI activities, with an emphasis on the formats currently in development that need further input
from the community. We will also present the current status and future plans for aspects of data deposition in ProteomeXchange. In addition to presentation, there will be time for open discussion
and feedback from the community on these activities.

07:30 HPP09.01: The Proteomics Standards Initiative - Introduction and Status Report, Eric W. Deutsch, Institute for Systems Biology, USA. This presenattion in pdf format is available here.
07:45 HPP09.02: Fine-Grained Modelling of Molecular Interactions in PSI MI XML 3.0, Henning Hermjakob, EMBL-European Bioinformatics Institute, UK. This presenattion in pdf format is available here.
08:00 HPP09.03: Mass Spectrometry Informatics Formats in Progress, Juan Antonio Vizcaino, EMBL-European Bioinformatics Institute, UK. This presenattion in pdf format is available here. Poster related to this talk is available in pdf format here. Additional slides on proteogenomics is available here.
08:15 HPP09.04: Open Discussion Focused on Future Projects of the PSI.
08:30 HPP09.05: ProteomeXchange Consortium - Introduction and Status Report, Henning Hermjakob, EMBL-European Bioinformatics Institute, UK. This presenattion in pdf format is available here.
08:45 HPP09.06: Open Discussion Focused on Experiences and Future Projects of ProteomeXchange.
Extra presentation: Yasushi Ishihama (Japan, Kyoto University). This presenattion in pdf format is available here.

Click here to go the the overview of C-HPP activities in HUPO 2015, Vancouver.