Protein evidence information

Missing Proteinpedia

Missing Proteinpedia summarizing known infomration on missing proteins (PE2-PE5) were launched by Macquerie University, Sydney.

Protein evidence summary

Statistics of protein evidence in NextProt

  • Regularly updated general statistics on protein validation status for each chromosome is available at NextProt. Interactive chart to represent the current status of missing proteins is available here. The latest version of neXtProt is 2018-01-17 and contains 2186 missing proteins (sum of PE2,PE3,PE4 entries).
  • Detailed information for each chromosome including the presence of SNPs, PTMs, splice variants and other information is available at NextProt.

Summary of protein evidence using Human Protein Atlas (HPA) data

  • Summary of protein evidence based on antibody generated within the Human Protein Atlas for all chromosomes according to data avaiable until August 2013. This information is not yet published, confidential is is only accessible to registered persons member to C-HPP consortium and the information is available here. Explanation of protein evidence score in Human Protein Atlas is available here.
  • The Human Protein Atlas has reached a major milestone by releasing protein data for more than 80% of the human protein-coding genes and RNA expression data for more than 90% of the genes. The normal tissue atlas now provide a distribution map of both protein and gene expression.

Peptide Atlas Chromosome Centric

Pepetide atlas provides list of protein evidence for each chromsome online here.

SWATH Atlas resources for >10 000 proteins

Fragment library of unique peptides > 10 000 proteins is available at SWATH Atlas.

SRM Atlas for peptide detection resources

SRM Atlas contains collections of MRM assays for various set of proteins and for different mass spectrometers.